Peer-reviewed Publications
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2007
Busov VB and Tsai CJ, Perennial challenges and opportunities, (2007) New Phytologist. 176: 3-6.
Busov VB, Brunner AM, Strauss SH, Genes for control of plant stature and form, (2007) New Phytologist. 177: 587-607.
Cai F, Xue C and Liu H, Ultrasensitive fluorescent responses of highly water-soluble Zzwitterionic Bboronic acid-Bearing regioregular head-to-tail polythiophene to biological species, (2007) V Chemistry A European Journal, in press.
Chandrasekaran R and Thompson M, Polybromo-1 bromodomains bind histone H3 at specific acetyl-lysine positions, (2007) Biophys. Biochem. Res. Comm. 355: 661-666.
Chandrasekaran R., and Thompson M, Thermodynamic analysis of the acetylation dependence of bromodomain-histone interactions, (2007) Analytical Biochemistry, in press.
Domozych D.S., Serfis A., Kiemle S.N. and Gretz M.R., The structure and biochemistry of charophycean cell walls. I. Pectins of Penium margaritaceum, (2007) Protoplasma 230:99-115.
Domozych D.S., Elliot L, Kiemle S.N. and Gretz M.R., Pleurotaenium trabecula, a desmid of wetland biofilms: The extracellular matrix and adhesion mechanisms, (2007) Journal of Phycology 43:1022-1038.
Feng T, Zhang SL, Sha Q, A method dealing with a large number of correlated traits in a linkage genome scan, (2007) BMC Genetics, 1(Suppl 1):S84.
Feng T, Zhang SL, Sha Q, Two-Stage Association Tests for Genome-wide Association Studies Based on Family Data with Arbitrary Family Structure, (2007) European Journal of Human Genetics, 15: 1169–1175.
Festucci-Buselli RA, Otoni WC and Joshi CP, Structure, organization and functions of cellulose synthase complexes in higher plants, (2007) Brazilian Journal of Plant Physiology 19(1) 1-17 in press.
Godin LM, Suzuki S, Donahue HJ, Jacobs CR and, Donahue SW, Calcium fingerprints in bone cell mechanotransduction. (2007) Biomechanics and Modeling inMechanobiology, 6(6):391-8.
Goldman J, Conley KA, Raehl A, Bondy DM, Pytowski B, Swartz MA, Rutkowksi JM, Jaroch DB, and Ongstad EL. Regulation of lymphatic capillary regeneration by interstitial flow in skin, (2007) Am J Physiol Heart Circ Physiol., 292:H2176-H2183.
Goldman J, Rutkowski JM, Shields JD, Pasquier MC, Cui Y, Schmökel HG, Hicklin DJ, Pytowski B, and Swartz MA. Cooperative and redundant roles of VEGFR-2 and VEGFR-3 signaling in adult lymphangiogenesis, (2007) FASEB J.,21(4):1003-1012.
Goldman J, Zhong L, and Liu SQ. Negative Regulation of Vascular Smooth Muscle Cell Migration by Blood Shear Stress, (2007) Am J Physiol Heart Circ Physiol. 292(2):H928-38.
Gorantla M, Babu P, Reddy Lachagari V, Reddy A, Wusirika R, Bennetzen JL, and Reddy AR. Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings, (2007) Journal of Experimental Botany 58:253-265.
Grant JB and Evans JA, A technique to collect and assay adhesive-free skin secretions from ambystomatid salamanders. (2007) Herpetological Review38(3):301-305.
Grant JB, Lawler JJ, Nelson CR, Olden JD, Silliman B, Academic institutions in the United States and Canada ranked according to performance in the field of Conservation Biology. (2007) Conservation Biology 21(5):1139-1144 (doi:10.1111/j.1523-1739.2007.00762.x).
Grant JB, Ontogenetic colour change and the evolution of aposematism: a case study in panic moth caterpillars. (2007) Journal of Animal Ecology76(3):439-447. (doi: 10.1111/j.1365-2656.2007.01216.x).
Gupta T, Zielinska B, McHenry J, Kadmiel M, Haut Donahue TL, IL-1 and iNOS gene expression and NO synthesis in the superior region of meniscal explants is dependent on magnitude of compressive strains, accepted, to appear, (2007) Osteoarthritis and Cartilage.
Janka LP, Jang-Stewart S, Hembolt A, Ong KG, Rajachar RM, Characterization of chitosan coated magnetoelastic materials for use as a non-fouling coating in percutaneous implants. (Submitted: Biomaterials December 2007).
Joshi CP, Brunner A, Busov V, Meilan R, Thammanagowda S, Tsai C.: Transgenic poplars. In: The Transgenics: A Reference Compendium on Plants. C. Kole and T. Hall (Eds), (2007) Blackwell Publishing, Malden, USA. in press.
Joshi CP and Mansfield SD: The cellulose paradox: simple molecule, complex biosynthesis, (2007) Current Opinion in Plant Biology. 10: 220-226.
Joshi CP: Genomics of wood development, (2007) In Aluízio Borém (Ed) Forest Biotechnology. Universidade Vicosa, Brazil, PP 273-295 (in Portuguese).
Kalnes T, Marker T, and Shonnard DR, Green diesel: A second generation biofuel, (2007) International Journal of Chemical Reaction Engineering, 5(article A48), http://www.bepress.com/ijcre/vol5/A48.
Kaur P, Yue H, Wu M, Liu M, Treece J, Waldeck DH, Xue C and Liu H. Solvation and aggregation of polyphenyleneethynylene based Anionic polyelectrolytes in dilute solutions, (2007) Journal of Physical Chemistry B. 111(29) 8589-8596.
Kaur P, Wu M, Anzaldi L, Waldec DH, Xue C and Liu H. Dependence of polyphenylneethynylene polyelectrolyte's fluorescence quenching on the electrostatic and hydrophobic properties of the quencher, (2007) Langmuir,13203-13208.
Kiemle S.N., Domozych D.S. and Gretz M.R., The exopolymers of desmids: Chemistry, structural analysis and implications in wetland biofilms, (2007) Phycologia 46:617-627.
Krom N, Recla J, Ramakrishna W, Analysis of genes associated with retrotransposons
in the rice genome, (2007) Genetica, in press.
Lin J, Gunter LE, Harding SA, Kopp RF, McCord R., Tsai CJ, Tuskan GA, Smart LB Development of AFLP and RAPD markers linked to a locus associated with twisted growth in corkscrew willow (Salix matsudana 'Tortuosa'), (2007) Tree Physiology 27: 1575-1583.
Liu H, Book chapter entitled “Pathogenic Bacterial Sensors Based on Carbohydrates as Sensing Elements” in a book entitled “Handbook of bacterial detection; biosensors, recognition receptors and Microsystems” by M. Zourob and T. Turner, (2007) Springer, in press.
Lu S, Li L, Xiaoping Yi, Joshi CP and Chiang VL, Differential expression of three eucalyptus secondary cell wall- related cellulose synthase genes in response to tension stress, (2007) Journal of Experimental Botany, in press.
Martin LJ, Woo JG, Avery CL, Chen HS, North KE, Multiple Testing in the Genomics Era: Findings from GAW 15, Group 15, (2007) Genetic Epidemiology, in press.
Martin-Garcia AR, Shonnard DR, Pannuri S, and Kamat S, Characterization of Free and Immobilized (S)-Aminotransferase for Acetophenone Production, (2007) Applied Microbiology and Biotechnology, 76(4), 843-851.
McGee ME, Magic KW, Miller DL, Maki AJ, and Donahue SW, Despite annual periods of disuse (hibernation), cortical bone porosity decreases and ash fraction, cross-sectional properties, and mechanical properties increase with age in black bear femurs, (2007) Engineering Fracture Mechanics, 74:1942-1952.
McGee ME, Miller DL, Auger JH, Black L, and Donahue SW, Black bear femoral geometry and cortical porosity are not adversely affected by aging despite annual periods of disuse (hibernation), (2007) Journal of Anatomy, 210: 160-169.
Murthy PPN, Identification of inositol phosphates by NMR spectroscopy: unraveling structural diversity, (2007) In Proceedings of the Bouyoucos conference on Biogeochemical interaction of inositol phosphates in the environment, B.L. Turner, A.E. Richardson, and E.J. Mullaney (Editors), CB international, Cambridge, MA, pp 7-22.
Nagy E, Lee T-C, Ramakrishna W, Xu Z, Klein P, SanMiguel P, Cheng C-P, Li
J, Devos K, Schertz K, Dunkle L, and Bennetzen J, Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin, (2007) Theoretical and Applied Genetics, 114:961-970.
Oakley RV, Wang YS, Ramakrishna W, Harding SA, Tsai CJ. Differential expansion and expression of alpha- and beta-tubulin gene families in Populus, (2007) Plant Physiology 10.1104/pp.107.107086.
Ong KG, Varghese OK, Mor GK, Shankar K, and Grimes CA, Application of finite difference time domain to dye-sensitized solar cells: the effect of nanotube-array negative electrode dimensions on light absorption, (2007) Solar Energy Materials & Solar Cells, vol. 91, pp. 250-257.
Rajachar RM, Trung AQ, Giachelli CM, The influence of surface mineral and osteopontin on the formation and function of murine bone marrow derived osteoclasts. (Under Review: Journal of the Royal Society Interface).
Rajachar RM, Tung E, Trung AQ, Giachelli CM, Role of carbonic anhydrase 2 (CAR2) in ectopic calcification. (Accepted for publication Cardiovascular Pathology, November 2007).
Rajinikanth M, Harding SA,Tsai CJ, The glycine decarboxylase complex multienzyme family in Populus, (2007) Journal of Experimental Botany 58: 1761-1770.
Roy SC, Ong KG, Zeng K and Grimes CA, Quantification of blood clotting kenetics II: Thromboelastograph analysis and measurement of erythrocyte sedimentation rate using magnetoelastic sensors, (2007) Sensor Letters, vol. 5, pp. 432 – 440.
Sankapal B, Setyowati K, Chen J and Liu H, Electrical properties of air-stable, iodine-doped carbon-nanotubepolymer composites. Sankapal, (2007) Applied Physics Letters 91 173103.
Sha Q, Chen HS, *Zhang SL, New association tests based on haplotype similarity, (2007) Genetic Epidemiology,31(6):577-93.
Shonnard D.R., Lindner A., Nguyen N., Ramachandran P., Fichana D.Hesketh R., Slater S., and Engler R., Green engineering integration of green chemistry, pollution prevention, and risk based considerations, (2007) Kent James, Ed., Kent and Riegel's Handbook of Industrial Chemistry and Biotechnology, eleventh edition, Springer Science + Business Media, LLC, ISBN: 978-0-387-27842-1, pages 210-270.
Tan EL, Shao R, Grimes CA, and Ong KG, Application of magnetoelastic sensors for quantifying deposition rate and size of homogeneous particles in liquid, (2007) Journal of Environmental Monitoring, vol. 9, pp. 1276-1281.
Tan EL, Ng WN, Shao R, Pereles B, and Ong KG, A wireless, passive sensor for quantifying packaged food quality, (2007) Sensors, vol. 7, pp.1747-1756.
Tan EL, Grimes CA, Shao R, and Ong KG, A wireless, passive dosimeter for tracking mercury vapor exposure, (2007) Sensor Letters, vol. 5, pp. 615-620.
Tang R, Wang F, Sha Q, Zhang SL, Chen HS, Genome-wide association tests by using block information in family data, (2007) BMC Proceedings,1(Suppl 1):S149.
Thompson M, Spectral properties and DNA targeting features of thiazole orange-peptide bioconjugates, (2007) Biomacromolecules 8, 3628-3633.
Tiimonen H, Häggman H, Tsai CJ, Chiang V, Aronen T, The seasonal activity and the effect of mechanical bending and wounding on the PtCOMT promoter in Betula pendula Roth, (2007) Plant Cell Reports 26: 1205-1214.
Villegas D, Hansen TA, Liu DF, Haut Donahue TL, A quantitative study of the microstructure and biochemistry of the medical meniscus horn attachments, (2007) Online Annals of Biomedical Engineering, of Orthopaedic Research.
Villegas D, Maes JA, Magee SD, and Haut Donahue TL, Failure properties and strain distribution analysis of meniscal attachments, (2007) Journal of Biomechanics, 40(12) 2655-2662.
Wallace JM, Rajachar RM, Allen MR, Bloomfield SA, Robey PG, Young MF, and Kohn DH.Exercise-induced changes in the cortical bone of growing mice are bone- and gender-specific, (2007) Bone; 40(4):1120-7.
Wang X, Zhang Z, Zhang SL, Sha Q, Genome-wide association tests by two-stage approaches with unified analysis of families and unrelated individuals, (2007) BMC Genetics, 1 (Suppl 1):S140.
Xue C, Luo FT and Liu H. Post-polymerization functionalization approach for highly water-soluble well-defined regioregular head-to-tail glycopolythiophenes, (2007) macromolecules, 40, 6863-6870.
Xue C, Palaniappan K, Arumugam G, Hackney SA, Liu J and Liu H. Sonogashira reactions catalyzed by water-soluble beta-cyclodextrin-capped palladium nanoparticles, (2007) Catalysis Letters, 116, 3-4.
Xu Z, Ramakrishna W, Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history, (2007) Gene, in press.
Yang P, Spiess B, Murthy PPN and Brown RE, Influence of metal cations on the intramolecular hydrogen-bonding network in phosphorylated compounds, (2007) J. Phys. Chem. 111, 3602-3612.
Youngs HL, Hamann T, Osborne E, and Somerville C, The cellulose synthase superfamily. Brown RM and Saxena IM (eds.), (2007) Cellulose: Molecular and Structural Biology, 3548, Springer.
Zhang SL, Sha Q. Association tests for complex disease genes while controlling population stratification, (2007) CURRENT TOPICS IN HUMAN GENETICS -Studies in Complex Diseases, by World Scientific Publishing Company; Imperial College Press. ISBN 978-981-270-472-6.
Zhang Z, Zhang SL, Sha Q, A multi-marker test based on family data in genome-wide association study, (2007) BMC Genetics, 8:65.
Zheng S, Sun J, Cheng Y, Li G, Hsu F, Zhu Y, Chang B, Liu W, Kim J, Turner A, Gielzak M, Yan G, Isaacs S., Wiley K, Sauvageot J, Chen HS, Gronberg H, Duggan D, Carpten J, Partin A, Walsh PC, Xu J, Isaacs W, Association between two unlinked loci at 8q24 and prostate cancer risk among European Americans, (2007) Journal of National Cancer Institute 99(20):1525-1533.
Zourob M, Ong, KG, Zeng, K, Mouffouk, F and Grimes, CA, A wireless biosensor for the direct detection of organophosphorous pesticides, (2007) The Analyst, vol. 132, pp. 338-343.
2006
Abdullahi AS, Underwood GJC, and Gretz MR, Extracellular matrix assembly in diatoms (Bacillariophyceae). v. environmental effects on polysaccharide synthesis in the model diatom Phaeodactylum tricornutum, (2006) Journal of Phycology 42:363-378.
Apoya MD, Yin L, Underwood GJC, and Gretz MR, Movement modalities and responses to environmental changes of the mudflat diatom Cylindrotheca closterium, (2006) Journal of Phycology 42:379-390.
Baker KC, Anderson M., Oehlke SA, Aastachkina AI, Haikio DC, Drelich J,and Donahue SW, Growth, characterization and biocompatibility of bone-like calcium phosphate layers biomimetically deposited on metallic substrata, (2006) Materials Science and Engineering: C, 26: 1351-1360.
Bhandari S, Fujino T, Thammanagowda S, Zhang D, Xu F, and Joshi CP, Coordinate expression of tension stress-responsive and secondary cell wall-associated KORRIGAN endoglucanase and three cellulose synthase genes in aspen trees, (2006) Planta224: 828-837.
Brodeur-Campbell SE, Vucetich JA, Richter DL, Waite TA, Rosemier JN, and Tsai C-J, Insect herbivory on low-lignin transgenic aspen, (2006) Environmental Entomology 35: 1696-1701.
Busov VB, Meilan R, Pearce DW, Ma C, Rood SB, and Strauss SH, Transgenic modification of gai or rgl1 causes dwarfing and alters gibberellins, root growth, and metabolite profiles in Populus, (2006) Planta 224: 288-299.
Chandrasekaran R and Thompson M, Expression, purification and characterization of individual bromodomains from human Polybromo-1, (2006) Protein Expr. Purif, I50: 111-117.
Chen J, Ramasubramaniam R, Xue C, and Liu H, A versatile molecular engineering approach to simultaneously enhanced multifunctional carbon nanotube polymer composites, (2006) Advanced Functional Materials 16: 114-119.
Chen J, Xue C, Ramasubramaniam R, and Liu H, A new method for the preparation of stable carbon nanotube organogels, (2006) Carbon 44: 2142-2146.
Donahue SW, Galley SA, Vaughan MR, Patterson-Buckendahl P, Demers L., Vance JL, and McGee ME, Parathyroid hormone may maintain bone formation in hibernating black bears (Ursus americanus) to prevent disuse osteoporosis, (2006) Journal of Experimental Biology 209:1630-1638.
Donahue SW, McGee ME, Harvey K., Vaughan MR, and Robbins C, Hibernating bears as a model for preventing disuse osteoporosis, (2006) Journal of Biomechanics 39:1480-1488.
Donahue SW and Galley SA, Microdamage in bone: implications for fracture, repair, remodeling, and adaptation, (2006) Critical Reviews in Biomedical Engineering 34: 215-271.
Eifler RL, Dehlin JM, Blough ER, and Haut Donahue TL, Glycosaminoglycan production in rabbit meniscal cells due to fluid flow, (2006) Journal of Orthopaedic Research 24: 375-384.
Filichkin SA, Meilan R, Busov VB, Ma C, Brunner AM, and Strauss SH, Alcohol-inducible gene expression in transgenic Populus, (2006) Plant Cell Reports 25: 660-667.
Filichkin SA, Wu Q, Busov VB, Meilan R, Lanz-Garcia C, Groover A, Goldfarb B, Ma C, Brunner A, and Strauss SH, Enhancer trapping in woody plants: isolation of a putative AT-hook motif transcription factor ET304 and characterization of the expression patterns conferred by its promoter in transgenic Populus and Arabidopsis, (2006) Plant Science 171: 206-216.
Galley SA, Michalek DJ, and Donahue SW, A fatigue microcrack alters fluid velocities in a computational model of interstitial fluid flow in cortical bone, (2006) Journal of Biomechanics 39: 2026-2033.
Garchow BG, Jog SP, Mehta BD, Monosso JM (posthumous), and Murthy PPN, Alkaline phytase from lilium longiflorum: purification and structural characterization, (2006) Protein Express. Purification 46: 221-232.
Gupta T and Haut Donahue TL, Role of cell location and morphology in the mechanical environment around meniscal cells, (2006) Acta Biomaterialia 2: 483-492.
Hanlon ARM, Bellinger BJ, Xiao G, Haynes K, Ball AS, Osborn M, Gretz MR, and Underwood GJC, Dynamics of EPS production and loss in an estuarine, diatom-dominated microalgal biofilm over a tidal emersion-immersion period, (2006) Limnology &Oceanography 51:79-93.
Haut Donahue TL, Hull, ML, and Howell, SM, A new algorithm for selecting meniscal allografts that best match the size and shape of the damaged meniscus, (2006) Journal of Orthopaedic Research 24: 1535-43.
Kim-Choi E, Danilo C, Kelly J, Carroll R, Shonnard DR, and Rybina R, Creating mutant luciferase resistant to HPV chemical inhibition by random mutagenesis and colony level screening, (2006) Luminescence 21: 135-142.
Kim E, Danilo C, Kelly J, Carroll R, Shonnard DR, and Rybina R, Kinetic characterization and in vitro toxicity evaluation of a mutant luciferase less susceptible to HPV chemical inhibition, (2006) Toxicology in Vitro 20: 1537-1547.
Lakkireddy VR, Mohammed H, Johnson JH, Bagley ST, The effect of a diesel oxidation catalyst and a catalyzed particulate filter on the emissions from a heavy duty diesel engine, (2006) SAE Technical Paper Series, No. 2006-01-0875 (In Diesel Exhaust 2006, SP-2022).
Maes JA and Haut Donahue TL, Time dependent properties of bovine meniscal attachments: Stress relaxation and creep, (2006) Journal of Biomechanics 39: 3055-3361.
McHenry JA, Zielinska B, and Haut Donahue, TL, Proteoglycan breakdown of meniscal explants following dynamic compression using a novel bioreactor, (2006) Annals of Biomedical Engineering 34: 1758-1766.
Mehta BD, Jog SP, Johnson SC, and Murthy PPN, Lily pollen alkaline phytase is a histidine phosphatase similar to mammalian multiple inositol polyphopsphate phosphatase (MINPP), (2006) Phytochemistry 67: 1874-1886.
Mohammed H, Lakkireddy VR, Johnson JH, and Bagley ST, An experimental and modeling study of a diesel oxidation catalyst and a catalyzed diesel particulate filter using a 1-D 2-layer model, (2006) SAE Technical Paper Series, No. 2006-01-0466 (In Diesel Exhaust Emission Control Modeling 2006, SP-2023).
Murthy PPN Structure and nomenclature of inositol phosphates, phosphoinositides, and glycosylphosphatidylinositols. (2006) Subcellular Biochemistry series: Volume 39, Biology of Inositols and Phosphoinositides (Eds. A. N. Lahiri and B.B. Biswas), Plenum Publishing Co. Ltd., London, pp 1-20.
Naranjo F, Márquez I, Gendzekhadze K, Zhang SL, Fernández-Mestre M, Yegres F, Richard-Yegres N, Navas T, Montagnani S, Ogando V, Layrisse Z Human leukocyte antigen class I and MICA haplotypes in a multicase family with Cladophialophora carrionii chromoblastomycosis, (2006) Tissue Antigens 68 (4), 287–292.
Sha Q, Zhang X, Zhu X, *Zhang SL, Analytical correction for multiple testing in admixture mapping, (2006) Human Heredity 62: 55-63.
Sha Q, Zhu X, Zuo Y, Cooper, R, *Zhang SL, A combinatorial searching method for detecting a set of interacting loci associated with complex traits, (2006)Annals ofHuman Genetics 70 (5), 677-692
Singh P, Thalagavara AM, Naber JD, Johnson JH, and Bagley ST, An experimental study of active regenerataion of an advanced catalyzed particulate filter by diesel fuel injection upstream of an oxidation catalyst, (2006) SAE Technical Paper Series, No. 2006-01-0879 (In Diesel Exhaust 2006, SP-2022).
Thompson M, Synthesis, photophysical effects, and DNA targeting properties of oxazole yellow-peptide bioconjugates, (2006) Bioconjugate Chemistry 17: 507-513.
Thompson M, DNA sequence-directed assembly of two peptide bioconjugates, (2006) Bioorganic Chemistry 34:235-247.
Tsai C-J, Harding SA, Tschaplinski TJ, Lindroth RL, and Yuan Y, Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus, (2006) New Phytologist 172: 47-62.
Tuskan GA, DiFazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Dejardin A, dePamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J., Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R., Joshi CP, Kangasjarvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouze P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai C-J, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S., Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, and Rokhsar D, The genome of black cottonwood, Populus trichocarpa (Torr. & Gray), (2006) Science 313: 1596-1604.
Wallace JM, Rajachar RM, Chen XD, Shi S, Allen MR, Bloomfield SA, Les CM., Robey PG, Young MF, and Kohn DH, The phenotype of biglycan-deficient mice is bone and gender specific, (2006) Bone 39:106-116.
Xue C, Luo FT, Chen J, and Liu H, Synthesis and biosensing application of highly water-soluble and cross-linkable poly(p-phenyleneethynylene) bearing osmium(II) complex and aldehyde groups, (2006) Analytica Chimica Acta 569: 27-34.
Xue C, Reddy RDV, and Liu H, Facile, Versatile pre-polymerization and post-polymerization functionalization approaches for well-defined fluorescent conjugated fluorene-based glycopolymers, (2006) Macromolecules, 39(17) 5747-5752.
Xue C, Jog SP, Murthy P, and Liu H, Highly water-soluble conjugated fluorescent glycopoly(p-phenylene)s for; lectin and escherichia coli., (2006) Biomacromolecules, 7(9) 2470-2474.
Zhu X, Zhang SL, Tang H, Cooper RA, A classical likelihood based approach for admixture mapping using EM algorithm, (2006) Human Genetics120(3): 431-445.
Zielinska B and Haut Donahue TL, 3D finite element model of medial meniscus meniscectomy - changes in the contact behavior, (2006) Journal of Biomechanical Engineering 128: 115-23.
2005
Bellinger BJ, Abdullahi AS, Gretz MR and Underwood GJC, Biofilm Polymers: Relationship between carbohydrate biopolymers from estuarine mudflats and unialgal cultures of benthic diatoms, (2005) Aquatic Microbial Ecology 38:169-180.
Busov VB, Brunner A, Meilan R, Filichkin S, Ganio L, Gandhi S, and Strauss SH, Genetic transformation: A powerful tool for dissection of adaptive traits in trees, (2005) New Phytologist 167: 9-18.
Chen H-S, Sha Q, and Zhang SL, A sequential test in family based analysis with parental haplotypes, (2005) Genetic Epidemiology 29: 240.
Gilbert RJ, McKeon RJ, Darr A, Calabro A, Hascall VC, and Bellamkonda RV, CS-4,6 is differentially upregulated in glial scar and is a potent inhibitor of neurite extension, (2005) Mol. Cell. Neurosci. 29: 545-558.
Goldman J, Le TX, Skobe M, and Swartz MA, Overexpression of VEGF-C causes transient hyperplasia but not increased lymphangiogenesis in regenerating skin, (2005) Circulation Research 96: 1193-1199.
Harding SA, Jiang H, Jeong ML, Casado FL, Lin H-W, and Tsai C-J, Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids, (2005) Tree Physiology 25: 1475-1486.
Harvey KB and Donahue SW, The tensile strength of black bear (Ursus americanus) cortical bone is not compromised with aging despite annual periods of hibernation,(2005) Journal of Biomechanics 38: 2143-2150.
Ho C-K, Chang S-H, Lung J., Tsai C-J, and Chen K-P, The strategies to increase taxol production by using taxus mairei cells transformed with TS and DBAT genes, (2005) International Journal of Applied Science and Engineering 3: 179-185.
Jog SP, Garchow BG, Mehta BD and Murthy PPN, Alkaline phytase from lily pollen: Investigation of biochemical properties, (2005) Archives of Biochemistry and Biophysics 440: 133-140.
Kemppainen AJ and Shonnard DR, Comparative life cycle assessments for biomass to ethanol production from different regional feedstocks, (2005) Biotechnology Progress 21: 1075-1084.
Pytowski B*, Goldman J*, Persaud K, Wu Y, Witte L, Hicklin D, Skobe M, Boardman KC, and Swartz MA, Complete and specific inhibition of adult lymphatic regeneration by a novel VEGFR-3 neutralization antibody, (2005) Journal of the National Cancer Institute 97: 14-21 (* equal contribution).
Sha Q, Chen H-S, Dong J, Jiang R, and Zhang SL, Haplotype sharing transmission/disequilibrium tests that allow for genotyping errors, (2005) Genetic Epidemiology 28: 341-351.
Sha Q, Chen H-S, Zhang SL New association tests based on haplotype similarity, (2005) Genetic Epidemiology 29: 277.
Sha Q, Dong J, Jiang R, and Zhang SL, Test of association between quantitative traits and haplotypes in a reduced-dimensional space, (2005) Annals of Human Genetics.
Strauss SH, Brunner A, Ma C, Busov VB, and Meilan R, Ten lessons from 15 years of transgenic Populus research, (2005) Forestry 77: 455-465.
Subhash G, Yao S, Bellinger B, and Gretz MR, Investigation of mechanical properties of diatom frustules using nanoindentation, (2005) Journal of Nanoscience and Nanotechnology 5: 44-50.
Vance JL, Galley SA, Liu DF, and Donahue SW, Mechanical stimulation of MC3T3osteoblastic cells in a bone tissue engineering bioreactor enhances PGE2 release. (2005) Tissue Engineering 11: 1832-1839.
Wang L, Haeusler RA, Good PD, Thompson M, Nagar S, and Engelke DR, Silencing near tRNA genes requires nucleolar localization, (2005) Journal of Biological Chemistry 280: 8637-8639.
Yang P, Murthy PPN, and Brown RE, Synergy of intramolecular hydrogen bonding network in myo-inositol-2-phosphate: theoretical investigations into the electronic structure, proton transfer and pKa, (2005) J Am Chem Soc.
Yu K, Zhang SL, Boreck I, Kraja D, Xiong C, Myers R, and Province M, Haplotype similarity based transmission/disequilibrium test under founder heterogeneity, (2005) Annals of Human Genetics 69: 455-467.
2004
Bennetzen JL, Coleman C, Liu RY, Ma JX, and Ramakrishna W, Consistent over-estimation of gene number in complex plant genomes, (2004) Current Opinion in Plant Biology 7: 732-736.
Jeong ML, Jiang H, Chen H-S, Tsai C-J, Harding SA, Metabolic profiling the sink to source transition in developing leaves of quaking aspen (Populus tremuloides), (2004) Plant Physiology 136: 3364-3375.
Jiang H, Deng Y, Chen H, Tao L, Sha Q, Chen J, Tsai C-J, Zhang SL, Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes, (2004) BMC Bioinformatics5: 81.
Lai J, Ma J, Swigonová Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park Y-L, Jeong O-Y, Bennetzen JL, and Messing J, Gene loss and movement in the maize genome, (2004) Genome Research 14: 1924-1931.
Ranjan P, Kao Y-Y, Jiang H, Joshi CP, Harding SA, and Tsai C-J, Suppression subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) trees altered in phenylpropanoid metabolism, (2004) Planta 219: 694-704.
Swigonova Z, Lai JS, Ma JX, Ramakrishna W, Llaca M, Bennetzen JL, and Messing J On the tetraploid origin of the maize genome, (2004) Comparative and Functional Genomics 5: 281-284.
Swigonová Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, and Messing J Close split of sorghum and maize genome progenitors, (2004) Genome Research 14: 1916-1923.
Tsai C-J and Hubscher SL, Cryopreservation in Populus functional genomics, (2004) New Phytologist 164: 73-81.
Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, and Dubcovsky J, The wheat VRN2 gene is a flowering repressor down-regulated by vernalization, (2004) Science 303: 1640-1644.
Zhang SL, Sha Q, Chen H-S, Dong J, and Jiang R, Impact of genotyping error on type I error rate of the haplotype-sharing transmission /disequilibrium test (HS-TDT): reply to Knapp and Becker, (2004) Annals of Human Genetics 74: 591-593. |